Supplementary material and links

for: The current excitement in bioinformatics - analysis of whole-genome expression data: how does it relate to protein structure and function? Mark Gerstein, Ronald Jansen. Current Opinion in Structural Biology, 2000, 10:5:574-584, 2000, 10:5:574-584 [pdf]

Expression data storage and information

GEO (NCBI gene expression omnibus)

ExpressDB (Harvard)

GeneX (NCGR)

Stanford Microarray Database

ArrayExpress

Classification of gene function

Single organism:

MIPS (yeast)

GenProtEC (E. coli)

FlyBase (Drosophila)

EGAD (human ESTs)

Enzyme function:

ENZYME

Pathways:

EcoCyc

WIT

KEGG

Functional classification for multiple organisms merged into one common source:

Gene Ontology Project

Expression profile similarity of functional groups

Significance of expression profile similarity for functional classes in MIPS categories

Yeast cell cycle (CDC28)
[Tab-delimited text][Excel]

Yeast diauxic shift
[Tab-delimited text][Excel]